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--- opticalspectrometers:start [2015/02/08 22:18] – james
+++ opticalspectrometers:start [2021/08/12 16:45] (current) – janet
@@ Line 2: / Line 2: @@
 Located in David McIntyre's lab Weniger 118.
-====Scanning Monochromator====
+====Scanning Monochromator (Grating Spectrometer or GS)====
-The Scanning Monochromator can make transmission, specular reflection, and diffuse reflection measurements on thin film, single crystal, and powder samples.
+The Scanning Monochromator can make transmission, specular reflection, and diffuse reflection measurements on thin film, single crystal, and powder samples. Here is the grating spectrometer manual, written in 2002, parts of which may be obsolete, but the basic structure is OK.
 === Sources ===
@@ Line 24: / Line 25: @@
 {{:opticalspectrometers:w_spectrum_small.png|:opticalspectrometers:w_spectrum.png}}
+A word of caution about the gratings: Reported **problem**, "I found that the monochrometer seems to be having trouble. I tried to reset it to 518 nm and found that thanks to what seems to be a belt problem, it is stuck at 926 nm", David Mc **responded** on (9/12/21), "I (kind of) fixed the spectrometer.  I know what the problem was, but I do not know what caused it.  BUT, YOU should figure out what caused the problem, as it has damaged the instrument already and if it happens again it may further damage the instrument. The indicators on the 2 spectrometers read the wavelength in the range 0-999.  But what they are really doing is indicating the angle of the grating, which is turned with the sets of gears and pulleys.  The indicator that was at 926 nm had arrived at that point not by going from 518 nm up to 926 nm, but rather by going from 518 nm, down to 0 and thorough 0 (to the negative side) and stopping at 926.  Thus the grating was at an angle where no light goes through the spectrometer.  The spectrometer is not designed to go past 0, so the gears and belts locked up.  By removing some belts and applying gentle but firm force, I was able to independently get the 2 spectrometers back into the “positive” region.  With the coupling belt removed, I set one spectrometer to 518 and then adjusted the other by monitoring the spectrometer output.  The output was maximized with the second spectrometer (closer to the lamp) set to 545 nm.  This indicates that the gears and belts slipped quite a bit.  Unfortunately, now we do not know which dial, if either, is correct.  The system needs to be recalibrated.  Moreover, the gears appear to slip during a manual scan and this may cause problems for a computer controlled scan."
 ===Sampling Accessories===
 The Scanning Monochromator has an Oriel 70491 integrating sphere to make diffuse reflection measurements.
-====Ocean Optics Spectrometer====
+====Ocean Optics Spectrometer (OO; also "Fiber Optic Spectrometer")====
 The Ocean Optics Spectrometer can make transmission, specular reflection, and diffuse reflection measurements on thin film, single crystal, and powder samples. Diffuse reflection measurements can only be made on strongly diffusely reflecting materials.
@@ Line 34: / Line 37: @@
 The Ocean Optics spectrometer has two detectors: Ocean Optics HR 4000 and Ocean Optics NIR256-2.5.
-An Ocean Optics HR 4000 spectrometer was used to take the ultraviolet-visible spectra. The HR 4000 has a 3648-element CCD-array detector with optical resolution of 0.27 nm. The ultraviolet-visible measurements spanned a wavelength range from 200 nm to 1150 nm.
+The Ocean Optics HR 4000 spectrometer is used to take ultraviolet-visible spectra. The HR 4000 has a 3648-element CCD-array detector with an optical resolution of 0.27 nm. The ultraviolet-visible measurements span a wavelength range from 200 nm to 1150 nm.
 {{:opticalspectrometers:dh2000-bal_lamp_spectrum.png?500|}}
-Ocean Optics NIR256-2.5 spectrometer was used to take the visible-near infer red spectra. The NIR256-2.5 has an InGaAs detector array with an optical resolution of 6.85 nm.  The visible-near infer red measurements spanned a wavelength range of 850 nm to 2600 nm.
+Ocean Optics NIR256-2.5 spectrometer is used to take the visible-near infer red spectra. The NIR256-2.5 has an InGaAs detector array with an optical resolution of 6.85 nm.  The visible-near infer red measurements span a wavelength range of 850 nm to 2600 nm.
 {{:opticalspectrometers:hl-2000-fhsa_lamp_spectrum.png?500|}}
 ===Light Sources===
-An Ocean Optics Mikropack DH-2000-BAL Deuterium Tungsten Halogen Light Source was used for the ultraviolet-visible measurements and an Ocean Optics Mikropack HL-2000 Tungsten Halogen Light Source was used for the visible-near infer red measurements. The spot size and incidence angle for both instruments are approximately 1.5 mm and 0 º.
+An Ocean Optics Mikropack DH-2000-BAL Deuterium Tungsten Halogen Light Source is used for the ultraviolet-visible measurements and an Ocean Optics Mikropack HL-2000 Tungsten Halogen Light Source is used for the visible-near infer red measurements. The spot size and incidence angle for both instruments are approximately 1.5 mm and 0 º.
 ===== Software & Data Analysis =====
+  * David McIntyre wrote {{:opticalspectrometers:thinfilms_dmc.pdf|a basic introduction to thin-film R and T analysis}}, explaining the T/(1-R) approach.
   * Levi Kilcher wrote an Excel sheet called {{:opticalspectrometers:index_calc_2006b.xls|index calc (2006 version is here)}} to analyze R & T data from the grating spectrometer, to get index, band gaps etc.  Here is a {{:opticalspectrometers:index_calc.pdf|help file for the index calc spreadsheet}}. See also Reports page for presentation, and Levi Kilcher's thesis on thesis page.
   * The Index_Calc2006.xls spreadsheet was fixed by James Haggerty (01/31/15).  The Macro buttons should now be functional
-  * Scout software is being implemented by Aaron Kratzer (2013). [[:ScoutManual|Working user manual]]
+    * **To use this and all the other spreadsheets given below you must enable the Solver add-in in the Excel Options Menu**
-  * Update from James Haggerty (02/08/15)
+      * Under the Excel main menu open "Excel Options", select the "add-ins" menu, "Solve Add-in" and select "Go"
-    * Here is a .zip file, "" which contains a file structure to help keep you organized as well as all the spreadsheets needed to calculate the band gap for a material.
+  * SCOUT software was worked on by Aaron Kratzer in 2013. Ryan Lance produced templates and instructions in 2017. See Ryan's and Aaron's theses on thesis page, and Ryan's SCOUT intro manual here  [[:ScoutManual|SCOUT instructions and tips]]
-      * There are quite a few spreadsheets in this zip file and as a result it is rather large (19Mb), so it may take a while to download.
+  * Update from James Haggerty (05/03/17)
-      * Inside the "Optical_Data" folder you will find another folder named **"Material_Name"**, **copy this folder** (create a new copy to save the original for adding materials) and **rename it for the material you are studying**.  For example if you are studying ZnO, then name the folder "ZnO".
+    * Here is an {{:opticalspectrometers:17-0503_optical_data_processing_excel_spreadsheets.zip|optical data processing}} .zip file which contains all the files needed to process both thin film and powder optical data collected on our spectrometers.  Included are the following spreadsheets
-      * Inside the "Material_Name" folder you will find a folder named **"Sample_ID", copy this folder** (create a new copy to save the original for adding samples) and **rename it with the sample ID for the individual sample** you are studying.
+      * **index_calc2015-V009.xlsm**: the latest version of the thin film data processing sheet originally written by Levi Kilcher
-      * Inside the "Sample_ID" folder you will find three more folders, GS for Grating Spectrometer data, OO for Ocean Optics Fiber Optic Spectrometer data, and Optical Comparisons for comparing measurements between the two spectrometers.
+      * **OO_Make_Int_Step_UV-IR-V01.xlsx**: Used to convert both UV-Vis and IR data from the fiber optic spectrometer to integer steps in wavelength.
-      * Inside both the GS and OO folders are similar folders, first there are folders for raw data (one folder for each type of measurement that can be made, for example you can make a measurement on the GS using the Xe lamp and the Si Detector)
+      * **Optical_Diff_Gap_Calc - V04.xlsm**: Alternative band gap calculation that does not use the Tauc method.  This method uses differentiation of the absorption model as a way to determine the band gap instead of the Tauc method.  This spreadsheet can easily be modified to calculate band gaps for either absolute or relative absorption.
-        * Next there are the folders "Optical_Plots", "Optical_Comparisons", and "Optical_Calculations".
+      * **Optical_Plots_Comparisons - V01.xlsx**: Used to incorporate multiple data sets into one plot for trend identification
-        * Inside the "Optical_Plots" folder are two spreadsheets, "Optical_Plots_MultiRange" and "Optical_Plots_SingleRange"
+      * **Optical_Plots_MultiRange-V07.xlsm**: Can be used to make a full spectrum data set from T and R data collected on two different spectrometers or two different regions collected by the same spectrometer.  The plots used setup the data for the calculations of the Swanepole method for calculating absorption.
-            * "Optical_Plots_SingleRange": First, **make sure to fill out all the blue cells in the spreadsheet**.
+      * **Optical_Plots_SingleRange-V06.xlsm**: Can be used to make plots of T and R from data collected on a single spectrometer.  The plots used setup the data for the calculations of the Swanepole method for calculating absorption.
-              * This spreadsheet allows you to select an appropriate range to plot all of your data.  For example, if the ends of your data are noisy this spreadsheet allows you to select only the good data to be plotted.
+      * **Optical_Plots_MultiRange_Diffuse-V02.xlsm** and **Optical_Plots_SingleRange_Diffuse-V02.xlsm**:  These two are similar to the other optical plots spreadsheets of similar names and perform similar functions, but they are designed with diffuse reflection measurements in mind.  The relative absorption calculated in these two sheets comes from the Kubelka-Monk theory for diffuse reflections.
-            * "Optical_Plots_MultiRange": First, **make sure to fill out all the blue cells in the spreadsheet**.
+      * **Optical_Tauc_Gap_Calc-V04.xlsm**:  This spreadsheet uses the traditional Tauc linearization of the absorption to determine the band gap values.  This spreadsheet allows for both allowed and forbidden transitions to be calculated.
-              * This spreadsheet works similar to "Optical_Plots_SingleRange" but now you can concatenate two data sets together as well as select off noisy end points.
+    * Lastly and most importantly are the two PowerPoint files
-            * **There are instructions in each spreadsheet, so be sure to read them carefully.**
+      * **17-0215_Optical_data_processing-Calculations_V01.pptx**: Step-by-step guide to thin film optical properties calculation as well as band gap determination. This presentation applies to the following spreadsheets:
-          * Inside the "Optical_Calculations" folder there are the spreadsheets "Index_Calc2015", "OO_make_Int_Step_UV-IR"(OO folder only), "Optical_Allowed_Band_Gap_Calc", and "Optical_Forbidden_Band_Gap_Calc".
+        * index_calc2015-V009.xlsm, Optical_Diff_Gap_Calc - V04.xlsm, and Optical_Tauc_Gap_Calc-V04.xlsm
-            * **If you plan on combining OO-NIR data with OO-UV-Vis data to calculate the absorption coefficient, then I suggest you first us the spreadsheet "OO_make_Int_Step_UV-IR"**, this will make the T and R data both integer steps (needed for the Index_Calc spreadsheet), by either averaging to reduce the amount of data (UV-Vis) or by doing a simple linear interpolation to add data points (NIR), and includes a before and after comparison plot to show that the interpolation did not harm the data.
+      * **17-0328_Optical_data_processing-Optical_Plots_V02.pptx**: Step-by-step guide to the optical plots spreadsheets.  This presentation applies to the following spreadsheets:
-              * This should be done before using the "Optical_Plots_MultiRange" spreadsheet to combine the two data sets.
+        * Optical_Plots_MultiRange-V07.xlsm, Optical_Plots_SingleRange-V06.xlsm, Optical_Plots_MultiRange_Diffuse-V02.xlsm, Optical_Plots_SingleRange_Diffuse-V02.xlsm, and OO_Make_Int_Step_UV-IR-V01.xlsx
-              * As with all of the spreadsheets, blue are entry cells, the rest should not be touched.
-            * "Index_Calc2015": works the same as "Index_Calc2006" but has been updated to the latest version of Excel, as of 02/08/15
+====Filmetrix Spectrometer (Not used much in 2020)====
-            * "Optical_Allowed_Band_Gap_Calc" and "Optical_Forbidden_Band_Gap_Calc" work the same.
-              * These are to be used after "Index_Calc2015" as the input is just the absorption coefficient.
-              * You can plot two different data sets on top of each other to determine band gaps using the linear fit in Excel
-                * You define the range over which to apply the linear fit, then take the equation and determine the band gap
-                * Or you can plot a single data set, just don't use the inputs for the second data set.
-          * Inside the "Optical_Comparisons" folder is a spreadsheet named "Optical_Plots_Comparisons"
-            * This spreadsheet works similar to "Optical_Plots_MultiRange" but is designed for comparing two data sets in the same range.
-              * Getting the formatting in this spreadsheet correct can be very involved so make sure to read all of the comments before proceeding.
 ===== Documentation =====
@@ Line 91: / Line 87: @@
 |^Date^Author^Title^Notes|
 |-|-|[[http://www.sspectra.com/sopra.html|Optical constants from Sopra labs]]|Optical constants of many different materials.  Widely quoted site.|
-|Journal of Physical and Chemical Reference Data 9, 561 (1980)|H. H. Li|[[http://www.nist.gov/data/PDFfiles/jpcrd162.pdf|Refractive Index of Silicon and Germanium and Its Wavelength and Temperature Derivatives]]|Exhaustive compilation of ref. ind. of Si, Ge, temp dep etc. Available at NIST reprint site.|
+|Journal of Physical and Chemical Reference Data 9, 561 (1980)|H. H. Li|[[http://www.nist.gov/data/PDFfiles/jpcrd162.pdf|Refractive Index of Silicon and Germanium and Its Wavelength and Temperature Derivatives]]|Exhaustive compilation of refractive index of Si, Ge, temp dep etc. Available at NIST reprint site.|
-|Journal of Physical and Chemical Reference Data 13, 103 (1984)|H. H. Li|[[http://www.nist.gov/data/PDFfiles/jpcrd240.pdf|Refractive Index of ZnS, ZnSe, and ZnTe and its wavelength and temperature derivatives]]|Exhaustive compilation of ref. ind. of ZnCh temp dep etc. Available at NIST reprint site.|
+|Journal of Physical and Chemical Reference Data 31, 931 (2002)|R.D. Shannon et al.|[[https://aip.scitation.org/doi/10.1063/1.1497384|Refractive Index and Dispersion of Fluorides and Oxides]]|Exhaustive compilation of refractive index of fits to refractive indices of common fluoride and oxides using Sellmeier formalism.|
+|Journal of Physical and Chemical Reference Data 13, 103 (1984)|H. H. Li|[[http://www.nist.gov/data/PDFfiles/jpcrd240.pdf|Refractive Index of ZnS, ZnSe, and ZnTe and its wavelength and temperature derivatives]]|Exhaustive compilation of refractive index of ZnCh temp dep etc. Available at NIST reprint site.|
 |Melles Griot Technical Manual, Materials Properties |Melles Griot|[[http://marketplace.idexop.com/store/SupportDocuments/MaterialProperties.pdf|Materials Properties]]|Good compilation of refractive index, transmission of different kinds of glasses - BK7, suprasil, CaF, crystal quartz, etc.  Also silicon and germanium.|
 |Melles Griot Technical Manual, Optical Coatings |Melles Griot|[[http://marketplace.idexop.com/store/SupportDocuments/1-Optical%20Coating%20and%20Materials.pdf|Optical Coatings]]|Good discussion of coatings and materials, reflection, angles of incidence, phase changes, fringes etc.|

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