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papers [2013/03/30 16:06] – tatepapers [2019/05/20 13:14] – janettate
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-====== Paper/poster assignment (Midterm 2) ======+====== DFT project ======
  
-One of the goals of the course is to become familiar with modern computational software that allows one to solve difficult problems. You will use the software package Wien 2k or Flair/Gem to calculate the band structure of a semiconductor, metal, or insulator.  Decide on an interesting system (talk to me and others about what is feasible). You always start by reproducing the work of others, and then go on to explore by yourself. You will calculate (at minimum for a passing grade) the dispersion relation and the total and partial densities of states of an interesting material. You will also calculate at least one other property – electron density, optical properties etc., for a B or higher grade. The difficulty of the project will be taken into account in assigning the grade. More information about the programs is under the Wien 2k link and the Flair/Gem link.+One of the goals of the course is to become familiar with modern computational software that solve difficult problems in solid state physics. You will use the software package OpenMX to calculate the band structure of a semiconductor, metal, or insulator. You can complement your own calculations by downloading band structures from an open source project called aflow. Decide on an interesting system (talk to the instructor and others about what is feasible). You always start by reproducing the work of others, and then go on to explore by yourself. You will calculate (at minimum for a passing grade) the dispersion relation and the total and partial densities of states of an interesting material. You will also calculate at least one other property – electron density, optical properties, spin polarization etc., for a B or higher grade. The difficulty of the project will be taken into account in assigning the grade.
  
-Write a **paper** that describes your findings.  It should should explain (i) what you have learned about band structure calculations during this process, and (ii) explain what is topical and interesting about your material in somewhat greater detail than you poster. Include references about both sub-parts. This paper should distill the knowledge you have gained about electronic structure, and be well-constructed to be very helpful to incoming PH575 students. It should show evidence of your scientific curiosity, and your ability to explain the essential concepts.  +===== Poster assignment ===== 
 +Summarize your results as a poster to be shown during class (date will be posted on the main calendar of the course). This is a conference of your peers, and may also be attended by interested parties such as former and prospective PH575 students, and faculty.
  
-Summarize your results as a **poster** for the group to be shown in the hour reserved for MT2.  This is a conference of your peers, and may also be attended by interested parties such as former and prospective PH575 students, and faculty.  You should not go to great expense to generate the posters; 8.5” by 11” sheets pasted to thin poster board will be fine. The total size is limited to about half the size of a whiteboard in WGR 304. Text and diagrams should explain your calculations, and provide supplementary information about your material. In the poster session, half the class will remain with the poster for the first half while the other half circulate; roles are swapped for the second half.+OSU Student Media Services, located in the Valley Library, prints posters for free if it is a class assignment. A typical poster size is 3 feet wide, 3.5 - 4 feet tall. Text and diagrams should explain your calculations, and provide other information about your material. During the poster session, you'll stay with your poster for 50% of the time, and circulate around other posters for 50% of the time. 
 + 
 +Posters should be uncluttered, informative and visually appealing. Here's [[http://betterposters.blogspot.com/|advice]] from a strong proponent of this statement.  Michael Alley has useful things to say about [[https://www.craftofscientificposters.com/examples.html|posters]] and about scientific writing. [[https://www.sigmapisigma.org/sigmapisigma/congress/2016/how-present-awesome-poster|Advice]] from the Society of Physics Students about presenting posters. 
 + 
 +===== Paper assignment ===== 
 + 
 +After the poster session, you will turn in a paper that describes your findings (due date on main calendar).  You should prepare a draft of the paper as you make the poster. The feedback you get from the poster should help you improve your paper. 
 + 
 +General things graders look for: 
 + 
 +      * the paper distills the knowledge you have gained about electronic structure, 
 +      * the paper would be helpful to an audience of incoming PH575 students. 
 +      * the paper shows evidence of your scientific curiosity, and your ability to explain essential concepts. 
 + 
 + 
 +Specific things graders look for: 
 + 
 +      * Good discussion of what your calculations show. 
 +      * Figures are easy to read (font size is big enough, axes are labelled, captions are sufficient to interpret the figure) 
 +      * The paper includes real-world connections such as applications of the material, or the reason for academic interest in the material. 
 +      * The paper cites a number of appropriate references from academic literature. 
 + 
 +Typical papers in the past have been about 8 pages including figures and references. Please use 12 point Times or 11 point Arial. Please use 1.5 x line spacing and 1.25” margins. These are standard choices for an academic manuscript and make grading easier. Color printing can make a huge difference for interpreting crystal structures, partial DoS etc. 
 + 
 +If you have questions, please ask! I will almost always email the whole class with my answer, or post the answers here under FAQ.
  
-If you have questions, please ask!  I will almost always email the whole class with my answer, or post the answers here under FAQ. 
  
 ====== FAQ ====== ====== FAQ ======
 === Audience === === Audience ===
-You are writing a scientific article for an audience of your peers, say incoming PH575 students.   You and your peers are highly educated, technically savvy people, but you do not know everything about every material that has ever been discovered.  You are educating your peers about a particular material that is of scientific interest or technological importance and you want to convey what is interesting or important about that material from the point of view of a scientist.  You are all capable of reading and understanding articles in any of the journals on solid state physics or materials.+You are writing a scientific article for an audience of your peers, e.g. incoming PH575 students.   You and your peers are highly educated, technically savvy people, but you do not know everything about every material that has ever been discovered.  You are educating your peers about a particular material that is of scientific interest or technological importance and you want to convey what is interesting or important about that material from the point of view of a scientist.  You are all capable of reading and understanding articles in any of the journals on solid state physics or materials.
  
 === How to go beyond the basics === === How to go beyond the basics ===
 Here are some ideas that might stimulate your creativity Here are some ideas that might stimulate your creativity
  
-  * explore another option within Wien+  * explore another option within OpenMX
   * pose a question that could be explored using this new tool   * pose a question that could be explored using this new tool
   * study a family of materials   * study a family of materials
-  * go beyond the standard "default clicks" in Wien to explore something you found interesting +  * go beyond the standard "default clicks" to explore something you found interesting 
-  * choose a more challenging material (not recommended because this is often an all-or-nothing proposition).+  * choose a more challenging material (not always recommended because this is often an all-or-nothing proposition).
  
 === Collaboration or no? === === Collaboration or no? ===
-Teach each other to use the Wien basics.  Share tips on how to use the software, especially on how to get to the DoS and the //E(k)// plots. This just like being in a lab where you show someone how to use a piece of equipment.  This kind of collaboration is healthy, but don't do the work for the other person.  In a lab, you show someone a tool and he or she decides what experiment to do with it.+Teach each other about how use the Wien and Flair basics.  Share tips on how to use the software, especially on how to get to the DoS and the //E(k)// plots. This just like being in a lab where you show someone how to use a piece of equipment.  This kind of collaboration is healthy, but don't do the work for the other person.  In a lab, you show someone a tool and he or she decides what experiment to do with it.
  
 Talk to others to help point you to information, but don't let the other person do all the legwork for you, and likewise, don't do the legwork for others. Talk to others to help point you to information, but don't let the other person do all the legwork for you, and likewise, don't do the legwork for others.
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 Please do not perform the other person's calculation.  Help him or her with specific calculational problems, but don't define the goals of the assignment for the other person.  Please do not perform the other person's calculation.  Help him or her with specific calculational problems, but don't define the goals of the assignment for the other person. 
  
-Don't work together to construct your posters - the temptation to produce the same format is very strong.  This is your poster.  But critique someone's poster and offer advice if asked. Tell each where to buy poster materials or how to get access to good printing //etc//.    +Don't work together to construct your posters - the temptation to produce the same format is very strong.  This is your poster.  But critique someone's poster and offer advice if asked. Tell each other where to get poster materials or how to get access to good printing //etc//.    
  
-=== Length ===+=== Length of paper ===
 Depends somewhat on the choice of topic and how many figures you include.  Typical papers in the past have been about 8 pages including figures and references. Depends somewhat on the choice of topic and how many figures you include.  Typical papers in the past have been about 8 pages including figures and references.
  
 === Posters === === Posters ===
-You should not go to great expense to generate the posters; 8.5” by 11” sheets pasted to thin poster board will be fine. The total size is limited to about half the size of a whiteboard in WGR 304. But do pay attention to presentation and organization - don't just put up a slew of 8.5” by 11” sheets taped together.+You should not go to great expense to generate the posters; 8.5” by 11” sheets pasted to thin poster board will be fine. <del>The total size is limited to about half the size of a whiteboard in WGR 304.</del> But do pay attention to presentation and organization - don't just put up a slew of 8.5” by 11” sheets taped together.  With a class the size it is in 2013, the best bet is to use tri-fold poster boards that stand alone - that way we can use the desks and the boards in the room.
  
 You should use color - it makes a huge difference in crystal structures, band structures, DoS plots //etc//. You should use color - it makes a huge difference in crystal structures, band structures, DoS plots //etc//.
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 Why a poster as well as a paper? It's so that you can share your work with the other students and learn something from them, too.  Science is about communicating ideas and results, so you need to practice that.  So come up with something interesting to tell your peers. Why a poster as well as a paper? It's so that you can share your work with the other students and learn something from them, too.  Science is about communicating ideas and results, so you need to practice that.  So come up with something interesting to tell your peers.
    
-=== Cautions ===+=== Pitfalls ===
 Don't write a technical manual (“go to this menu, and click this button”). Don't write a technical manual (“go to this menu, and click this button”).
  
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 ===== Questions from class re the project ===== ===== Questions from class re the project =====
-Q.  How do I know my band structure is right? +Do students from previous years have useful advice for me?
  
-A.  Look in the literature - someone else is bound to have calculated it.  Results will vary a bit with different methods used.  Remember to reference others' work in your report.+Yes! Here is the advice from previous years.
  
-Q.  My material has 80 atoms per unit cell - that OK?+Q. What is a CIF file?
  
-A.  80 atoms is too big for our system, but there may be some symmetry that allows a smaller cell to be used and Wien will find it.  So try it and see.  If it's too big, you'll use all the memory and tie up the system so no one can use it.  Not good!  +A. The Crystallographic Information File (CIF) is the standard for crystallographic data exchange prescribed by the International Union of Crystallography. It was described in a paper in Acta Cryst. (1991). A47, 655–685 by S. R. Hall, F. H. Allen and I. D. Brown.
  
-Q. Can I study doping, (eg B-doped Si) or solid solutions like ZnS_(1-y)Se_y?+Here is some of the text from a CIF file describing anatase TiO2:
  
-A.  No, it's best to stay away from these because you will need a much larger unit cell.  This is because if you replace say 1% of Si with P, you will need 100 unit cells (99 with Si and 1 with P) to define the basic unit.   Refer to the question above.+''_atom_site_label''
  
-Q. Can I study graphene?+''_atom_site_type_symbol''
  
-A.  The 2-d nature of graphene requires special symmetry that is too difficult for a beginning project in Wien.  Graphite is a better choice.  (You might be able to use Flair for graphene, but you must do a 3-d structure in addition to graphene if you go this route.)+''_atom_site_fract_x''
  
-Q. Can I study conductivity as a function of temperature?+''_atom_site_fract_y''
  
-A.  No.  All calculations are inherently T=0 calculations.  There are no excitations of the system included.+''_atom_site_fract_z''
  
-Q. Can I study magnetic properties?+''_atom_site_occupancy''
  
-A.  There is an option to include spin polarization, which should allow you to determine whether a material is magnetic or not in its ground state.  +''_atom_site_U_iso_or_equiv''
  
-====== 2012 Papers ======+''Ti1 Ti+4 0 0 0 1 0.0''
  
-==== Amador, Jennie M. ==== +''O1 O-2 0.2821 0.2821 0 1 0.0''
- ZnO (the most-common Wurtzite and the less-commonly created zincblende form)+
  
-==== Aspitarte, Lee R.==== +Translating the above code into english: “There is a Ti atom at (x,y,z) = (0,0,0) and an O atom at (0.2821a, 0.2821b, 0), where a and b are unit cell dimensions.
-graphene +
-==== Chen, Boxiao ==== +
-graphene +
-==== Dearmon, Howard D. ==== +
-diamond structure compared to the graphite structure+
  
-==== Decker, Shawn R. ==== +It is helpful to drag a CIF file into the OpenMX Viewer (a browser based application) to see the crystal structure. You may wish to export the crystal structure as an .xyz file so that you have the actual atomic coordinates. 
-hexagonal BN+Can I try grading someone's paper from a previous year?
  
-==== Flynn, Joshua D. ==== +Q.  How do I know my band structure is right? 
-==== Gouliouk, Vasily ==== +
-==== Heo, Jae Seok ==== +
-CuInSe and related materials+
  
-==== Jennings, Michelle L. ==== +A.  Look in the literature - someone else is bound to have calculated it.  Results will vary a bit with different methods used.  Remember to reference others' work in your report.
-==== Johnson, Brian H. ==== +
-2d LiF?+
  
-==== Kumar, Nitish ==== +Q.  My material has 80 atoms per unit cell - that OK?
-compare 2 different structures possible for barium titanate+
  
-==== Lund, Ryan A.==== +A.  80 atoms is too big for our system.
-==== Mansell, Michael A.====+
  
-==== Mason, Ashley D. ==== +Q. Can I study doping, (eg B-doped Si) or solid solutions like ZnS_(1-y)Se_y?
-PbTiO3 and BaTiO3+
  
-==== Nikkel, Jason W. ==== +A.  No, it's best to stay away from these because you will need a much larger unit cell.  This is because if you replace say 1% of Si with P, you will need 100 unit cells (99 with Si and 1 with P) to define the basic unit.   Refer to the question above.
-Strontium titanate+
  
-==== Oleksak, Richard P. ==== +Q. Can I study graphene?
-CuInSe2, CuGaSe2+
  
-==== Sahu, Subin ==== +A.  We've looked at this material in class, so if you really want to do this, look for a new, related 2D material or try some advanced options.
-ZnS+
  
-==== Tennant, Christopher P. ==== +Q. Can I study conductivity as a function of temperature?
-ZnO+
  
-==== Vowell, Schuyler R.==== +A.  No.  All calculations are inherently T=0 calculations.  There are no excitations of the system included.
-compare the band structure, DoS, and Fermi surface, of copper (and perhaps Ag and Au) to the FEG model+
  
-==== Wardini, Jenna L. ==== +Q. Can I study magnetic properties?
-Graphite+
  
-==== Wills, Lindsay A. ==== +A.  There is an option to include spin polarization, which should allow you to determine whether a material is magnetic or not in its ground state.  
-different forms of alumina, α-alumina and γ-alumina. +
- +
-==== Winter, Ian S. ==== +
-Tungsten carbide?+
  

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