Acetyl Coenzyme A

Use of the Aldol Condensation in Biosynthesis of Complex Molecules

Coenzyme A is an important template molecule for biological chemistry based on aldol condensations.  For example, the acetylated version, acetyl-coenzyme A (AcCoA) is important in the citric acid cycle.


acetylcoa.mol
AcCoA.gif (5326 bytes) Acetyl Coenzyme A is a complex molecule beginning with a heterocycle, extending through a diphosphate, then a short dipeptide, ending with an acetylated thiol.

The S-acetyl group can be enzymatically deprotonated and will participate in reactions resembling aldol and Claisen condensations.  For example, two molecules can react to form acetoacetyl-CoA:

AcAcCoA.gif (2139 bytes) Self-reaction gives an acetylacetyl group.

In fatty acid synthesis, the keto carbonyl is reduced, dehydrated and reduced again to form a butanoyl group. Additional Claisen-type reactions at the acyl group extend the chain by 2 carbons at a time.
FA_synth.png Fatty acid synthesis involves reduction of the keto group, elimination of water, and reduction of the double bond. This is repeated as necessary to build up as many carbons as needed.
The chain growth can be coded to stop at a certain length, and the reduction steps can be skipped; this often happens in the biosynthesis of mono- and polyunsaturated fatty acids.

However, the chain can also be extended through multiple Claisen-type reactions:

ketide_1.gif (4101 bytes) If the keto groups are left in, they can curl around and undergo aldol condensations that result in complex ring systems.

Look at what can happen when this "polyketone" curls around on itself:

polyketide_2.gif (4686 bytes) The 6-member rings that form are often enediones that tautomerize to aromatic phenols.

You should recognize the possibility of proton transfers, leading to aromatization of several rings:

polyketide_3.gif (2761 bytes) An example is tetracylcine.

In actuality, there are minute differences in the order of steps, and other reactions are performed to add or cleave other alkyl groups and change oxidation state at specific positions.  However, you should be able to recognize the "blueprint" of the structure above in the structure of the antibiotic tetracycline, itself a metabolite made by the one-celled organism Streptomyces viridifaciens:


tetracycline.mol
tetracycline.gif (3305 bytes)

Many natural products contain this motif.  For another example, look at erythromycin, produced by a different strain of Sterptomyces (S. erythrens):


erythromycin.mol
Erythromycein is a complex polyketide having a 14-member cylic lactone.